species:   Drmel
pid:       MI0011588
parent:    dme-mir-2499
paralog:   
locus:     NC_004354.4:19557008-19557103
matures:   ['CGUGCGUAGACGUCAGCGCAAUGC', 'AUGCGGAUGACAUUCACGUCCGUA']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NC_004354.4:19557008-19557103

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

*********************                                                            ***************
UCCUUGCUGUGGGUGUGGUUGCGUGCGUAGACGUCAGCGCAAUGCCUUUGUUUGGCGGCAUGCGGAUGACAUUCACGUCCGUAUCCGCACACACAU
.......((((.((((((.((((.((((.((.((((.((((.((((..........))))))))..)))).)).)))).)))).)))))).)))).
---------------------CGUGCGUAGACGUCAGCGCAAUGC--------------------------------------------------- l=24 a=0 c
-----------------------------------------------------------AUGCGGAUGACAUUCACGUCCGUA------------- l=24 a=0 c*
-CCUUGCUGUGGGUGUGGUUG--------------------------------------------------------------------------- l=20 a=1 ma
-----------------------------------------------------------------------------------UCCGCACACACAU l=13 a=0 ma*

-CCUUGCUGUGGGUGUGGUUG--------------------------------------------------------------------------- l=20 a=1 (ma)
-----------------------------------------------------------AUGCGGAUGACAUUCACGUC----------------- l=20 a=1 
-----------------------------------------------------------AUGCGGAUGACAUUCACGUCCG--------------- l=22 a=1 

mb-00111
ax-1011011
ku-01
ss-110111101000
fn-011
